Showing posts with label open data. Show all posts
Showing posts with label open data. Show all posts

Thursday, July 20, 2017

articles on Open access in Physics Today May 2017. Quantity of all scientific articles = 3 millions articles/year (2020)


The state of open access by Charles Day 

Physics Today 70, 5, 8 (2017); doi: http://dx.doi.org/10.1063/PT.3.3535
On page 24 (see below) you’ll find David Kramer’s in-depth report on the current state of open-access publishing. Open access and its place in the landscape of academic journals have changed since November 2012, when Physics Today last covered the topic. Besides authors, publishers, and policy makers, other actors are now on the open-access stage, among them charitable foundations, scholarly collaboration networks, and, yes, pirates who post unauthorized copies of papers on Russian servers.
My attitude toward open access is conflicted. On the one hand, I agree that the fruits of publicly funded research should be freely available, especially to scientists in poor countries and to scientists employed by companies and colleges that can’t afford journal subscriptions. On the other hand, I’m well aware that Physics Today is funded in part by the profits that AIP’s publishing subsidiary makes from selling subscriptions to its 19 journals. If Physics Today had to rely solely on advertising and subscription revenue, it would have to shrink and change format.
Regardless of where you, I, or anyone else stands on open access, there are forces in play that are hard for publishers to resist. One of those forces arises from the nature of the principal end product of scholarly research, a paper that’s usually in the form of a PDF. The P in PDF stands for portable, which is what PDFs all too easily are. For Physics Today’s August 2009 issue, I wrote a feature article about iron-based superconductors, which had been discovered just two years earlier. Google Scholar lists 16 unauthorized PDFs of the article, 13 of which are on Chinese websites. (I couldn’t find the article on Sci-Hub, the pirate website founded by a Kazakhstani grad student.)
Portability isn’t the only disrupting force at play. University library budgets have not kept up with inflation or with the growth in the number of the world’s scientists and their output. The cash crunch is forcing librarians to scrutinize journals based on price and usage. Subscriptions to those that don’t meet increasingly stringent criteria are not renewed.
Despite those trends, some aspects of scholarly publishing remain the same. It’s just as hard now as it was in the 19th century to conceive of an experiment or theory that is both original and significant enough to be worth publishing in a scientific journal. Reviewing your peers’ papers before publication continues to be an unpaid yet valuable duty. And a paper’s final version of record still needs to be archived, online if not in bound volumes on library shelves.
When I ask physicists and other scientists how they choose where to publish their work, I tend to get the same answers. Scientists want their papers to be read, so they publish in journals that their peers read. A physicist told me once that he regretted publishing in the prestigious Proceedings of the Royal Society because his fellow fluid dynamicists didn’t read that journal. Physics of Fluids, he mused, would have been a better choice.
Some physicists tell me that if they have a hot result, they’ll go for a journal with a high impact factor, such as Physical Review Letters, Nature, or Science. But in the digital age, as George Lozano, Vincent Larivière, and Yves Gingras discovered in an extensive bibliometric study, the correlation between a journal’s impact factor and a paper’s citations is weakening.1
One of the findings in David’s report in this issue is that open-access papers in the physical sciences currently make up just 10–12% of the total. That modest proportion likely reflects the continuing appeal and reputation of traditional journals. But as any marketing guru will tell you, appeal and reputation are intangible components of a brand. The contest for the best papers in physics will likely be won by the publishers who nurture those intangibles, regardless of access model.

REFERENCES

1. G. A. Lozano, V. Larivière, Y. Gingras, J. Am. Soc. Inf. Sci. Tec. 63, 2140 (2012). https://doi.org/10.1002/asi.22731

Steady, strong growth is expected for open-access journals

Publishing models continue evolving to accommodate government mandates. Meanwhile, publishers look to cope with article-sharing sites that affect their business.
David Kramer
Physics Today 70, 5, 24 (2017); doi: http://dx.doi.org/10.1063/PT.3.3550


In the more than 15 years since the advent of open-access (OA) journals, scientific publishers who once viewed them as an existential threat are now operating their own. But despite double-digit growth in OA, scientific societies and commercial publishers alike agree that the vast bulk of their publications will remain wedded to the traditional subscription model for the foreseeable future.
“Open access is much less of a contentious issue now,” says H. Frederick Dylla, retired executive director of the American Institute of Physics, which publishes Physics Today. “It’s happening. It’s a business model.” Of more concern to publishers today is the illicit posting of papers on article-sharing services. By some estimates, such as a 2014 report prepared for the European Commission, more than half of the scientific literature from 2007 to 2012 was accessible for free online. But it’s unclear how much of that content consists of papers that infringe on publishers’ copyrights because they are freely accessible despite licenses that are supposed to keep them behind paywalls.

Academic libraries face rising subscription costs for an ever-growing number of journals. Some libraries also underwrite researchers’ costs for publishing in open-access journals.

Broadly speaking, scientific publishing follows two models. Traditionally, most journals obtain their revenues from institutional subscribers, mainly universities. Outside those licenses, the journal content is located behind an online paywall. So-called gold OA journals provide their entire content for free online immediately upon publication. Their revenues are provided from fees, known as article processing charges, paid by the article authors or their institutional funders.
A second category, known as green OA, consists of nongold OA articles that are freely available in one of the following forms: An article may be made available prior to publication as a preprint. A manuscript version may be provided by the publisher so authors can post it to their websites and institutional archives at the time it is accepted for publication. Or it can be released in its final published form, known as the version of record, after a specified period, most often one year after publication (this is sometimes referred to as delayed gold OA). Most scientific papers today are or will become available in some fashion as green OA.
The extent of fully OA publishing, like that of journal publishing overall, is hard to measure. About 800 of the 11 000 or so journals included in Journal Citation Reports, the Clarivate Analytics (formerly Thomson Reuters) service that calculates the widely used journal impact factors, are gold OA. Of the 21 500 journals tracked by Scopus, an abstract and citation database, around 3500 are gold OA titles. But less exclusive indexes, such as the Directory of Open Access Journals, count more than 9300 journals published in 129 countries. Estimates of the total scientific journal population—subscription and OA—range from a low of 33 000 to a high of 60 000, depending in part on where the line is drawn between scholarly and trade journals.
The International Association of Scientific, Technical, and Medical Publishers, whose 120 members publish two-thirds of all STM journal articles, estimated annual revenues for English-language STM journal publishing at $10 billion in 2015, up from $8 billion in 2009. Delta Think, a scholarly publishing consulting firm, valued the fully OA journal market last year at $374 million, and for 2017 it forecasts growth of 12%, roughly twice the rate of growth in the overall journal market. “Going forward, we think that the open-access market will continue to grow at about 10% to 15% through 2020,” says Delta Think’s Dan Pollock.

MANDATES AND ARCHIVES

The growth of OA is largely driven by dozens of governments around the globe that have mandated free access to the results of publicly funded research. In most cases, including in the US, those mandates require grantees to make their papers free after a one-year embargo. The same applies in the UK, where the government also sets aside funding to pay for gold OA. The European Union requires grantees of its €80 billion Horizon 2020 program to provide free access within six months of publication (see Physics Today, March 2014, page 26).
In the US, the major federal research-funding agencies have chosen several public repositories for their sponsored research. The largest, PubMed Central (PMC), has been operated by the National Institutes of Health since 2000. In addition to NIH-funded research, PMC has been designated by NASA, NIST, the Environmental Protection Agency, the Department of Homeland Security, and other, smaller funding agencies to house their research results.
The Department of Energy, NSF, US Geological Survey, Department of Defense, Smithsonian Institution, and Department of Agriculture have chosen to link their individual repositories to the Clearinghouse for the Open Research of the United States (CHORUS) database, established by a consortium of journal publishers. As of 30 March 2017, the CHORUS repository held 327 000 articles, of which 74 000, just under 25%, were post-embargo and freely accessible.
Unlike PMC, where articles are deposited in their entirety, CHORUS directs users to the participating publishers’ websites. The distinction is important for publishers, who want to attract traffic.
In response to public mandates, the majority of subscription journals now offer the option for authors to pay an article processing charge to make their articles immediately OA. That so-called hybrid model currently accounts for about 4% of published papers (see the figure on page 26). But at some future theoretical tipping point, says Ken Heideman, publications director at the American Meteorological Society (AMS), the amount of free content could outweigh the subscription-only articles and force publishers to lower their subscription rates. “If you think of the whole of your content as a piece of cheese, pretty soon the hole gets bigger and it’s Swiss cheese,” he says.


Numbers of scientific articles published in fully open-access (gold) journals 
and of fully open-access articles in subscription journals (hybrid) 
are increasing at a faster rate than are numbers of articles in subscription-only journals. 
Nearly all articles ultimately become freely available 
in some form (green open access), 
often after an embargo period. (Data provided by Elsevier.)

Some nonprofit research funders, notably the Bill & Melinda Gates Foundation and the Max Planck Society, now require gold OA publication of their sponsored research. Some organizations also may permit publication in hybrid journals.

Some nonprofit research funders, notably the Bill & Melinda Gates Foundation and the Max Planck Society, now require gold OA publication of their sponsored research. Some organizations also may permit publication in hybrid journals.

THE ECONOMICS

It’s clear that the subscription model remains more lucrative. Journal publishers receive, on average, about $5000 per article from subscriptions, according to industry consultant Joseph Esposito in the Scholarly Kitchen blog in December 2016. But article processing charges for OA journals generally are only $1000–$1500 per article.
While they contain as much as 18% of all journal content, gold OA journals and gold articles in hybrids produce just 3–6% of all publishing revenues. A smaller proportion of articles in the physical sciences, some 10–12%, are published in OA journals, Pollock says. The disparities between content and revenue probably reflect the fact that OA is still a relatively young market, with publishers discounting article processing charges, he says.
Two of the 11 AMS journals, including the flagship Bulletin of the American Meteorological Society, are gold OA. Heideman says physical sciences have been “dragged along” to OA by the biomedical community. “We certainly agree that open access is a good thing within the limits of our business model. But it isn’t one size fits all. We’ll continue to do it incrementally.”
AMS decided a year ago to make all content of its nine subscription journals freely available after a one-year embargo, regardless of funding source. It was felt to be unfair to authors not subject to mandates to have their work remain stuck behind a paywall.
But Heideman regards the finite embargo period as an experiment, and its financial impact on AMS is uncertain. “We’re banking on the fact that libraries are still going to see the value in subscribing to our content rather than waiting for a full year to get it free. We feel confident, but there are no guarantees,” he says. “So far we haven’t seen anything that would alarm.”
With more than 200 gold OA journal titles, Elsevier is second to Springer Nature in the number of fully OA journals published. All but 200 of Elsevier’s 2300 subscription journals are hybrid, and roughly 20 000 of the 420 000 articles published in Elsevier journals last year were gold OA. Elsevier policy and communications director Gemma Hersh sees gold OA continuing to grow alongside subscription. In addition, she says, “we’re doing a lot of work with institutions in the US and globally to make green open access more effective and workable.”
Nature Research, a component of Springer Nature and the parent company of Nature and its related journals, declined an interview request. However, a spokesperson said in a statement that the company offers more than 70 journals with OA options, from the multidisciplinary Nature Communications to highly specialized titles such as the 25 Nature partner journals, which are published in association with academic institutions, philanthropies, and membership organizations.
Nature Research believes the subscription model is the best way to provide sustainable and widespread access to journals with low article-acceptance rates, the spokesperson said.
OA is a particular challenge for highly selective journals such as Science and Nature, which publish fewer than 10% of submissions and thus have a considerably higher cost per article published. Jeremy Berg, editor-in-chief of Science, says, “A substantial part of your costs relates to processing, peer reviewing, and so on, for papers you end up not accepting.” A 2013 report in Nature put that magazine’s per-article cost at $30 000 to $40 000. For both flagship publications, advertising and income from other journals offset those high costs. Berg says there have been discussions about adopting hybrid models for Science and the four other Science-branded journals (a fifth, Science Advances, is fully OA).
PLOS, founded by former NIH director Harold Varmus and other prominent scientists in 2001 as one of the original all-OA publishers, in 2007 created PLOS One, a multidisciplinary online platform. As of 30 March, PLOS One had published nearly 18 000 physics articles. Its “megajournal” model differs from nearly every other journal in that research need not be novel, although it still must be sound and is peer reviewed.
After peaking at 31 500 in 2013, annual submissions to PLOS One fell to 22 000 last year. The decline came as other publishers started up copycats such as Nature Research’s Scientific Reports. Some observers, including Phil Davis, a publishing consultant, have questioned PLOS’s continued viability should PLOS One continue to shrink. And David Knutson, PLOS communications manager, acknowledges that PLOS One accounts for the “lion’s share” of parent company revenues, which help to offset costs of PLOS’s four biomedical journals. But Knutson says that the company remains in strong financial shape and that PLOS One today is “at the point where it’s healthy and sustainable.” PLOS’s reported net assets were steady at $30 million from 2014 to 2015.
PLOS considers itself an advocacy organization, and Knutson notes that former CEO Peter Jerram once asserted that should it be put out of business by other OA publishers, it will have accomplished its mission.
Davis is concerned that the Trump administration’s proposed cuts to research could cause a falloff in demand for OA publishing, since authors will have less funding to pay article processing charges. Some university libraries offer support for researchers to pay for publication, even as they claim to have insufficient funds to afford subscriptions to thousands of journals. “Should they be spending $3000 on buying access to a really excellent collection of journals or pay for one paper to be published?” Davis asks.

PHYSICISTS’ VIEWS

Physics-related papers have routinely been shared on the arXiv website since the 1990s. Those preprints typically are posted prior to the peer-review and editing processes that are performed by publishers. University of Maryland physicist Daniel Lathrop says posting to arXiv “satisfies our intent to have open access,” and he notes that the preprint includes both figures and the basic conclusions. “It’s not clear to me why you need open access in the refereed journal as long as it’s the common practice” to post on arXiv, he says.
Still, Lathrop acknowledges that some fellow authors, particularly younger ones, feel strongly about OA, and their views will be considered in deciding where to submit a paper. But a more important consideration, particularly for young researchers, is the reputation and impact factor of the journal.
David Helfand, a Columbia University astrophysicist, sees OA as largely irrelevant to all but “the few people who are ideologically committed to it, who believe it’s just right,” and to those whose sponsors require publishing in OA journals. Helfand, a past president of the American Astronomical Society, says free public access to AAS’s journal content is available through US public libraries. “The number of times this has been used in the past few years can probably be counted on your fingers,” he says.
In AAS’s publishing model, two-thirds of revenues are from article processing charges, with the remainder derived from subscriptions. Should funding for US science drop, Helfand worries that astronomers may submit their work to Monthly Notices of the Royal Astronomical Society, which has no author charges but costs institutions more than $14 000 a year.
“I don’t think if AAS went gold it would change very much, because 98% of the papers are publicly available the day they are accepted, or several weeks before that” in arXiv, he says. A larger problem for public access, he thinks, is scientists’ failure to write in “actual understandable English.”
Helfand’s and Lathrop’s views are supported by author surveys. In a 2015 Nature Publishing survey of its authors, 18 000 respondents ranked an OA option 14th on a list of 17 factors driving the choice of where they submit articles.
Paul Hardaker, chief executive of the UK’s Institute of Physics, which publishes more than six dozen journals, says its 2015 author survey also placed OA well down the list of considerations. “There is quite clearly a small community of strong advocates for open access, but it’s not reflected in the response we’ve had from the broader community.”
However, some view OA as an imperative. Daniel Kammen, a physicist at the University of California, Berkeley, is editor-in-chief of the decade-old OA journal Environmental Research Letters. Kammen says it is “absolutely the case” that all academic research should be open access, whether its funding comes from public or private sources. “The primary mission of a researcher is to be in some sense H. L. Mencken’s public intellectual,” he says, which requires that both the paper and the underlying data be openly accessible. OA, he says, needs to rapidly get research results out “in a world where research is competing with tweets and Instagram and all these rapid things.”

A CITATION ADVANTAGE?

A long-standing debate has surrounded whether research will be cited more frequently in other scientific articles if it is openly available. Several studies have identified a citation advantage for such research articles. The OA advocacy organization Scholarly Publishing and Academic Resources Coalition (SPARC) maintains a scorecard of 70 citation studies, 46 of which find an advantage for OA articles. Seventeen others find no advantage, and 7 are inconclusive.
One of the more recent reviews, released in August 2016 by Science-Metrix and 1science, finds a 50% citation advantage for OA articles compared with subscription ones that aren’t subsequently made open through green OA options. But a September 2016 report by Hersh and coauthor Andrew Plume claims that and other studies’ methodologies are flawed, principally because of selection bias caused by a lack of randomization and control. Authors could be choosing OA journals for their most important research, for example, or researchers from elite institutions may be authoring a disproportionate share of OA articles.
By some accounts, a 2011 review by Davis is the sole randomized and controlled study to date. He concludes that while OA articles received significantly more downloads and reached a broader audience in the first year, they were cited no more frequently, nor any earlier, than subscription-access articles over the three-year study period.

BEYOND OPEN ACCESS

Publishers are trying to accommodate demand for OA while maintaining the subscription model. Last October, Springer Nature launched a content-sharing initiative to encourage “reasonable” free sharing with nonsubscribers by authors of articles in the publisher’s 2300 journals, including Nature titles. Immediately upon publication, authors are provided shareable links to their papers, which can be viewed but not downloaded. The links can be posted anywhere, including the author’s website, article-sharing sites known as scholarly collaboration networks (SCNs), and social media. Notably, an earlier year-long pilot version of the shared links program involving 50 journals resulted in no loss of institutional sales for the subscription-based journals.
Dylla sees figuring out how to deal with the SCNs as the new challenge for publishers. SCNs help scientists collaborate at all stages of their research and raise the visibility of their results, says Hersh of Elsevier, which owns Mendeley, the third largest SCN. Smaller SCNs have been around for decades. But the two largest—Berlin-based ResearchGate claims 10 million members and San Francisco-based Academia.edu boasts 50 million academic users—were founded in 2008 and are funded by venture capital.
Many articles shared on SCNs have been posted contrary to licensing agreements, intentionally or not. “They have a mixture of proper and improper content,” says Dylla. Publishers seem to have reached a consensus to allow articles to be shared privately among collaborators, he says, in the same way that authors would mail reprints of articles to colleagues in the pre-electronic era. But there is a limit to how broadly a paper can be shared, and the particular version that can be shared, without jeopardizing the publishers’ ability to solicit, review, produce, and archive the content, he notes.
The International Association of STM Publishers has developed voluntary principles for article sharing and operates a website, How Can I Share It, to inform researchers about which versions of articles they can properly share. “The aim is not in any way to shut down collaborations but to make sure the ecosystem works effectively,” says Hersh.
To counter unauthorized content sharing, Dylla says publishers should strive to make content accessible with one-click convenience, akin to accessing movies on Netflix. “If you’ve got a single password, it doesn’t matter if you’re on a phone, iPad, or desktop, you can get to it and it comes right back to where you left off,” he says. “Try that with journals.” The music industry too, he adds, managed to avoid extinction from rampant piracy by working with Pandora, YouTube, and other providers to share revenues.
 

Ref.

© 2017 American Institute of Physics.

Saturday, June 3, 2017

Interoperability and Vcard, vcf by MMS

vCard is a file format standard for electronic business (or personal) cards.
vCards are often attached to e-mail messages, but can be exchanged in other ways, such as on the World Wide Web (instant messaging,...) or cellular phone (by MMS).

This file format standard allows an interoperable save process to your "contacts.

Process  with an Android:

  1. go to Messaging app, and then "long tap" the received MMS
  2. On the Message options prompt, select "Save attachment".
  3. On the save attachment prompt, select the checkbox and tap "save". The .vcf file should be saved on your phone storage Download folder.
  4. launch My Files app. Go to the phone Download folder (storage/sdcard0/Download) and tap the .vcf file.
    Note: If you didn’t see that particular file in the Download folder, you can make use of the search function in My Files.
  5. If this is your FIRST time opening a .vcf file on your Android, you should see the Complete action using prompt. Here, tap "Contacts" and then Always.
  6. On the Create contact under account window, select 
    • Google to save the contact to your Gmail contact
    • Phone to save the contact to your phone contact app.
---

Example with a samsung galaxy:

Tuesday, May 23, 2017

comparison figshare versus zenodo






Zenodo

see my posts (tag zenodo)

HTML of figshare

9 fields (input)


HTML


Three levels of services

  1. general features for FREE accounts
  2. services for publishers
    1. figshare Viewer
    2. visualize any format of supplemental and digital files within your articles
  3. services for institutions
    1. Curation workflows
    2. manage the curation of files to be made public, control quotas and administer rights
https://figshare.com/features

 additional custom METADATA

Public files hosted on figshare are issued with Digital Object Identifiers (DOIs) via DataCite through the California Digital Library. In order to meet with DataCite metadata requirements, figshare requires users to add the following information before making files public and citable: Title, author list (ordered), categories (set ontology), tags (free text) and a description with as much context as needed to interpret the files. Users can also add links to external sources.

Institutional clients can define additional custom metadata when implementing figshare.
https://support.figshare.com/support/solutions/articles/6000079087-metadata-and-dois

Profile: All about your profile page

https://support.figshare.com/support/solutions/articles/6000088096-profile-all-about-your-profile-page

Example of a publisher 

https://plos.figshare.com/

Other programmatic tools (in GitHub)

https://github.com/search?utf8=%E2%9C%93&q=figshare


comparison of 2 open archives: figshare zenodo


Zenodo

see my posts (tag zenodo)

HTML of figshare

9 fields (input)


HTML


Three levels of services

  1. general features for FREE accounts
  2. services for publishers
    1. figshare Viewer
    2. visualize any format of supplemental and digital files within your articles
  3. services for institutions
    1. Curation workflows
    2. manage the curation of files to be made public, control quotas and administer rights
https://figshare.com/features

Additional custom METADATA

Public files hosted on figshare are issued with Digital Object Identifiers (DOIs) via DataCite through the California Digital Library. In order to meet with DataCite metadata requirements, figshare requires users to add the following information before making files public and citable: Title, author list (ordered), categories (set ontology), tags (free text) and a description with as much context as needed to interpret the files. Users can also add links to external sources.

Institutional clients can define additional custom metadata when implementing figshare.
https://support.figshare.com/support/solutions/articles/6000079087-metadata-and-dois

Profile: All about your profile page

https://support.figshare.com/support/solutions/articles/6000088096-profile-all-about-your-profile-page

Example of a publisher 

https://plos.figshare.com/

Other programmatic tools (in GitHub)

https://github.com/search?utf8=%E2%9C%93&q=figshare

Tuesday, March 14, 2017

Horizon 2020 -the Work Programme 2017



Horizon 2020 is an €80 billion fund for research from the European Commission.

http://ec.europa.eu/research/horizon2020/pdf/press/fact_sheet_on_horizon2020_budget.pdf

A recent statement from Carlos Moedas, European Commissioner for Research, Science and Innovation told us that “as of the Work Programme 2017, the current Open Research Data Pilot will be extended to cover all thematic areas of Horizon 2020, making open research data the default setting. This move will boost competitiveness by accelerating innovation and collaboration, improving transparency, and avoiding duplication of efforts.”

This means that as of January 1st 2017, all funded proposals will need to make all of the data and digital research outputs they generate openly available.


---
Ref.
https://figshare.com/blog/The_European_Commission_Mandates_Open_Data_From_January_1st_2017/234

Monday, March 13, 2017

dissemin impactstory web service déposer sur des archives ouvertes Zenodo HAL



Dissemin est à comparer à https://impactstory.org/
qui lui ne propose que de relier vos références (qu'il trouve) à des liens URL (No free fulltext anywhere? Consider uploading this work to an open repository like Zenodo or Figshare.)
Dissemin vous aide à trouver et à uploader.
Dissemin http://dissem.in/

C'est un web service encourageant les chercheurs à diffuser leurs publications librement.
Dissemin propose une plateforme web qui récolte des métadonnées à partir de différentes sources et qui détermine la disponibilité du texte intégral des publications des chercheurs. Il a été conçu pour encourager l'usage des dépôts (plutôt que les pages personnelles).

Les chercheurs ont souvent le droit de mettre leurs articles en accès libre sur le Web, pour compléter la version payante proposée par les éditeurs traditionnels. Pourtant, tous ne le font pas.

À cause de cela, les bibliothèques doivent payer à prix d'or des abonnements électroniques aux journaux de recherche, ce qui grève leurs finances et limite leur offre.

C'est déjà bien de mettre vos articles en ligne sur votre page Web, mais ce n'est pas suffisant ! De telles copies sont moins pérennes et plus difficiles à trouver que celles qui sont déposées dans des dépôts bien indexés.

Dissemin cherche des copies de vos articles dans une grande collection de dépôts ouverts en ligne, et vous indique ceux qu'il n'a pas pu trouver de cette façon.

Il propose aussi le service de chercher les références dans wikipedia et de les lier à des documents open access dans des archives ouvertes.

Quand nous l'avons trouvé dans l'un des dépôts que nous parcourons. La liste de ces dépôts est à voir ci-dessous.

Sources primaires


  • CrossRef.org
  • BASE (Bielefeld Academic Search Engine); grâce au moteur de recherche BASE, nous avons accès à plus de 80 millions de ref.
  • SHERPA/RoMEO
  • Zotero

Sources secondaires

Moissonnées avec le protocole OAI-PMH.

  • arXiv
  • HAL
  • PubMed Central
  • OpenAIRE
  • DOAJ
  • Persée
  • Cairn.info
  • Numdam

http://dissem.in/sources

Quelques personnes ont créé une associations 'CAPSH' qui gère certains aspects de dissemin:
CAPSH (Committee for the Accessibility of Publications in Sciences and Humanities) is a French nonprofit association promoting the open access to academic publications. It is in charge of the Dissemin project.

Liste des présentation à des congrès conf:

https://association.dissem.in/index.html.fr

process

On se connecte avec son ORCID id à
http://dissem.in/

Il trouve les fichiers et les classe suivant l'accord avec l'éditeur.
Puis il permet de faire de l'upload vers ZENODO (avec peu de metadata)
(et aussi vers HAL voir ci-dessous).

Le site a aussi une fonction "profile" qui liste vos file et vos dépôt (upload).

FAQ


Documentation

Les dépôts

Quel dépôt utiliser ?
Il y a en gros trois types de dépôts :
Les dépôts thématiques, qui se limitent à certains domaines précis, comme arXiv.
Les dépôts institutionnels, dédiés à l'archivage de la production scientifique d'une institution ou d'un pays.
Les dépôts académiques génériques comme Zenodo, dont le périmètre n'est limité qu'aux données issues de la recherche.
Si votre communauté scientifique préfère un dépôt thématique particulier, il vaut mieux l'utiliser afin d'améliorer votre visibilité. Dans le cas contraire, les dépôts institutionnels ou génériques sont également une option raisonnable.

ZENODO HAL 

Pourquoi ne puis-je pas déposer dans mon dépôt favori pour l'instant ?

Pour l'instant, nous vous proposons seulement de déposer vos articles dans les dépôts suivants :
  • Zenodo, un dépôt innovant soutenu par l'UE.
  • HAL, un dépôt français géré par le CCSD
Pour proposer davantage de dépôts, il faut que nous écrivions du code spécifique à chaque dépôt, mais il faut surtout que ces dépôts nous donnent l'autorisation de déposer des papiers en masse. Nous avons envisagé d'intégrer les dépôts suivants :
arXiv, un dépôt généraliste bien connu. Pour l'instant, arXiv n'autorise pas Dissemin à déposer en utilisant leur API SWORD, et demande aux utilisateurs de déposer dans arXiv manuellement. Si vous voudriez utiliser Dissemin pour déposer vos articles dans arXiv, n'hésitez pas à les contacter.

CCSD HAL

Il permet à chaque chercheur de mesurer l’accessibilité de ses publications et de mettre en ligne en quelques clics celles qui ne sont pas déjà librement disponibles. Plus besoin de saisir manuellement les métadonnées (titre, auteurs ou identifiants variés) : celles-ci sont automatiquement renseignées par Dissemin.
Cette fonctionnalité est rendue possible par l’exploitation de deux sources de données : le Bielefeld Academic Search Engine (BASE) et Crossref, qui couvrent presque 100 millions de publications.

Jusqu’à présent, les documents ainsi rendus librement accessibles étaient hébergés par Zenodo, un dépôt appartenant au CERN. Les chercheurs de toutes disciplines souhaitant déposer dans HAL peuvent désormais aussi utiliser Dissemin comme canal de dépôt depuis début 2017.

Dissemin utilise l’import SWORD pour déposer les publications. Celles-ci suivent le parcours classique de vérification avant d’être mises en ligne.  Les dépôts effectués par Dissemin seront rattachés au compte utilisateur de l’auteur dans HAL à partir de l’identifiant ORCID. Pour cela il faudra juste que l’auteur ait associé son compte HAL avec son ORCID.
Cette réalisation est le fruit d’un partenariat entre le Consortium Couperin, le CCSD, et le CAPSH, qui développe Dissemin.
https://www.ccsd.cnrs.fr/2017/03/deposer-dans-hal-avec-dissemin/

GitHub

Le code source est sur GitHub
python
https://github.com/dissemin/dissemin

Puis-je récolter vos données ?

Oui ! Nous avons même une API. Si vous n'êtes pas satisfait par ce qu'elle propose, n'hésitez pas à nous contacter.
http://dev.dissem.in/#api

Friday, March 10, 2017

DataCite services, Zenodo and MANY ORCID integration services (and impactstory)



DataCite services

Locate, identify, and cite research data with DataCite, a global provider of DOIs for research data.

https://www.datacite.org/
(less services than crossRef).

http://stephane-mottin.blogspot.fr/2017/01/datacite-inist-cern-metadata-schema.html

DOI handbook
http://www.doi.org/hb.html

In order to create new DataCite DOIs and assign them to your content, it is necessary to become a DataCite member or work with one of the current members.

Through the web interface or the API of the DataCite Metadata Store you will be able to submit a name, a metadata description following the DataCite Metadata Schema and at least one URL of the object to create a DOI. Once created, information about a DOI is available through our different services search, event data, OAI-PMH and others).

The DataCite Metadata Store is a service for data publishers to mint DOIs and register associated metadata. The service requires organisations to first register for an account with a DataCite member.
https://mds.datacite.org/

http://schema.datacite.org/

status of the services
http://status.datacite.org/

https://blog.datacite.org/

Services of DataCite profiles

DataCite Profiles integrates DataCite services from a user’s perspective and provides tools for personal use. In particular, it is a key piece of integration with ORCID, where researchers can connect their profiles and automatically update their ORCID record when any of their works contain a DOI.

https://profiles.datacite.org/
example
https://profiles.datacite.org/users/0000-0002-7088-4353
0000-0002-7088-4353 is my ORCID Id.

You can get

  • your ORCID Token 
  • your API Key
    (if you want to use the ORCID API).

In your profile, you can select how to connect:

You can also follow ORCID claims.
For example: "You have 5 successful claims, 0 notification claims, 0 queued claims and 0 failed claims"

You are also linked to Impactstory
Impactstory is an open-source website that helps researchers explore and share the the online impact of their research.
https://impactstory.org/u/0000-0002-7088-4353
0000-0002-7088-4353 is my ORCID id.

You must authorize impactstory.org to link with your ORCID.
You must also connect impactstory.org with your twitter.
In impactstory, Zenodo from ORCID are "datasets".

Zenodo and DataCite METADATA

If you use ZENODO, an Open Archive with DataCite DOI, DataCite services are interesting.

Zenodo gives a DataCite DOI and an export to a clean datacite METADATA (XML DataCite 3.1).

(see also my posts on this blog with the tag "zenodo")

Zenodo DataCite and Orcid

If you use ZENODO and your ORCID Id  then you have some services:

You must allow Zenodo to "Get your ORCID iD".

You must allow DataCite to  allow ORCID "Add works"
But only 5 METADATA are automatically sent to ORCID by DataCite.

  • Title, 
  • Year, 
  • Description (the full field of Zenodo), 
  • Contributor (the field 'creator' of Zenodo = authors),
  • DOI

You can add metadata in ORCID...
Change type 'Work category' and  'Work type'.
Then Source is changed from 'zenodo' to 'Stéphane MOTTIN'

In impactstory, Zenodo links (from ORCID) are considered as "datasets" with only 4 METADATA
  • Title, 
  • Year, 
  • Contributor (the field 'creator' of Zenodo = authors),
  • DOI

ORCID

You can see the list of ORCID "trusted organization"
at https://orcid.org/account
DataCite can 'add works'.


For other ORCID Search & link wizards:
http://support.orcid.org/knowledgebase/articles/188278-link-works-to-your-orcid-record-from-another-syste

for example
  • The Crossref Metadata Search integration allows you to search and add works by title or DOI. Once you have authorized the connection and are logged into ORCID, Crossref search results will also include a button to add works to your ORCID record.
    http://search.crossref.org/
  • The DataCite integration allows you to find your research datasets, images, and other works. Recommended for locating works other than articles and works that can be found by DOI.
  • The ISNI2ORCID integration allows you to link your ORCID and ISNI records and can be used to import books associated with your ISNI. Recommended for adding books.
    http://isni2orcid.labs.orcid-eu.org/
  • Use this tool to link your ResearcherID account and works from it to your ORCID record, and to send biographical and works information between ORCID and ResearcherID.
    http://wokinfo.com/researcherid/integration/
  • Use this wizard to import works associated with your Scopus Author ID; see Manage My [Scopus] Author Profile for more information. Recommended for adding multiple published articles to your ORCID record.
    https://www.elsevier.com/solutions/scopus/support/authorprofile

Thursday, March 2, 2017

Sunday, January 29, 2017

Scribus et autres. Livres en ligne et PAO.

Une fois le livre mis en page nous avons 5 types de fichiers de base (qui ont servi à la génération du pdf qualité imprimeur):
  • du Quark version X,
  • du InDesign,
  • du Scribus qui lui est open
  • du MS Word...
  • du tex, latex..., là aussi de l'open.

Scribus

Scribus ne peut faire ni import ni export des fichiers Quark ou inDesign.
Il existe des problèmes de lecture et de transcodage entre les versions de quark (v4, v9...) et les lectures entre indesign et quark sont problématiques:
http://stephane-mottin.blogspot.fr/2016/12/lire-les-vieux-files-unix-executable.html

On peut noter des publications de qualité avec Scibus:
https://fr.wikipedia.org/wiki/Scribus
par exemple:
Sur le site web FLOSS Manuals francophone, tous les livres mis en page, en complément des versions automatisées sur la plateforme d'écriture.
https://fr.wikipedia.org/wiki/FLOSS_Manuals
https://www.flossmanualsfr.net/faq-floss-manuals-francophone/
Livre créer un ePub: https://boutique.flossmanualsfr.net/home/18-epub-9791090791206.html
chap 2: Convertir son fonds à partir de fichiers PDF.
---

Saturday, January 14, 2017

mendeley data gives DOI. force 11 joint-declaration-data-citation-principles-final


Mendeley Data is a place where researchers can upload and share their research data for free. Datasets can be shared privately amongst individuals, as well as published to share with the world. Sharing research data is great for science as it enables data reuse and supports reproducibility of studies. It’s also a fantastic way to gain exposure for your research outputs, as every dataset has a DOI and can be cited.

When you publish your data with our service, you choose a licence to publish it under, from a range of Creative Commons and open software licences. This means you retain control of the data, and choose the terms under which others may consume and reuse it. You may delete your dataset at any time, by contacting us.

Your data is stored on Amazon S3 servers, in Germany, where it benefits from redundancy and multiple backups. Our service has been extensively penetration tested and received certification. In addition, we partner with DANS (Data Archiving and Network Services - an industry-leading scientific data archive service), to preserve your data over the longterm. This means your dataset will be discoverable in perpetuity, via the DOI it is issued on publication. If you have any further questions, please contact us.

Datasets must be:

  • scientific in nature
  • research data - rather than the research article, which may have resulted from the research

Datasets must not be:

  • have already been published, and therefore not already have a DOI
  • contain executable files or archives that are not accompanied by individually detailed file descriptions.
  • contain copyrighted content (audio, video, image, etc)
  • contain sensitive information (for example, but not limited to: patient details, dates of birth etc.)
All services provided by Mendeley Data - storing, posting and accessing data - are free-to-use. In future, we may introduce a freemium model - for instance charging for storing and posting data, above a certain dataset size threshold. This will not affect existing datasets, which will continue to be stored for free. We will offer paid-for versions of our service to institutions.


https://data.mendeley.com/

https://data.mendeley.com/faq

force11

https://www.force11.org/group/joint-declaration-data-citation-principles-final
(2014)

Interoperability and Flexibility

Data citation methods should be sufficiently flexible to accommodate the variant practices among communities, but should not differ so much that they compromise interoperability of data citation practices across communities

Ten search engines for researchers that go beyond general search engine (Google)


Open access search engines

CORE

What is it?
An experimental service, allowing keyword and semantic search of over 10 million open access articles.

Key feature: If you find an article you like, CORE will find similar ones by analysing the text of that article.


Aggregating the world’s open access research papers

We offer seamless access to millions of open access research papers, enrich the collected data for text-mining and provide unique services to the research community.

https://core.ac.uk/

an example:
https://core.ac.uk/display/8507685
(my PLOS-ONE)

BASE

What is it?
BASE is one of the world's most voluminous search engines especially for academic open access web resources from over 2,000 sources.

Key features: Allows you to search intellectually selected resources and their bibliographic data, including those from the so-called ‘deep web’, which are ignored by commercial search engines. There are several options for sorting the results list and you can browse by Dewey Decimal Classification and document type.


Library catalogues

Copac

What is it?
A Jisc service allowing you to look through the catalogues of over 70 major UK and Irish libraries.

Key features: Good for locating books and other material held in research collections in the UK;  especially useful for humanities.


France: sudoc


Web Scale Discovery services

What is it?
Many university libraries have one of these services working behind the scenes, they index a vast range of academic resources and provide sophisticated search tools.

Key features: The search includes journal articles, e-books, reviews, legal documents and more that are harvested from primary and secondary publishers, aggregators and open-access repositories.

Zetoc

What is it?
One of the world’s most comprehensive research databases, this Jisc service gives you access to over 28,000 journals and more than 52 million article citations and conference papers through the British Library’s electronic table of contents.

Key features: Researchers can get email alerts of the table of contents in journals, keeping them up to date with the latest literature in their field.

Europeana

What is it?
This is a meta-catalogue of cultural heritage collections from a range of Europe's leading galleries, libraries, archives and museums. The catalogue includes books and manuscripts, photos and paintings, television and film, sculpture and crafts, diaries and maps, sheet music and recordings.

Features: You can download your resource, print it, use it, save it, share it and play with it.

Social web

Twitter

What is it?
Harness the power of social discovery and particularly the #icanhazpdf hashtag for locating PDFs that you do not have access to through your institution.

Features: Tweet an article you need using this hashtag and someone will point you to a copy that you can access.


Ref.
https://www.jisc.ac.uk/blog/ten-search-engines-for-researchers-that-go-beyond-google-11-jul-2013?from=promo

JISC: article processing charge in UK; Institution as e-textbook publisher


We’re working to develop services, provide support, and influence policy in order to enable UK higher education to realise the rewards of open access (OA). Read our introductory guide and find out more about our role in open access.
https://www.jisc.ac.uk/content/open-access

 APC (article processing charge) data
https://www.jisc.ac.uk/monitor-UK

About Monitor UK

Monitor UK presents APC (article processing charge) data, from across the UK, in a number of simple reports. This enables institutions and funders to explore and evaluate UK cost and compliance data relating to open access publishing.

The reports made available provide business intelligence not otherwise available, which can be sliced and diced by publisher and institution and filtered by date range in an easy-to-use web interface.

Learn more about the benefits, and register for access, on the Monitor website.
http://monitor.jisc.ac.uk/uk

Institution as e-textbook publisher

Jisc Collections is funding four project teams from UK higher-education institutions to investigate the viability of publishing their own e-textbooks.

The fundamental question they seek to address is: Will the institution as e-textbook creator help students by providing a more affordable higher education, and promote a better, more sustainable information environment for libraries, students and faculty?

Four project teams have been selected to carry out this work: The University of Liverpool, The University of Nottingham, The University of the Highlands & Islands with Edinburgh Napier University and University College London.

The programme started in April 2014 and is scheduled to finish in September 2018, when all books should have been published for a minimum of two years. This website aims to provide the background and details of the work each team is carrying out from the menu on the left hand side.

https://www.jisc-collections.ac.uk/Institution-as-E-textbook-Publisher/

https://www.jisc-collections.ac.uk/Institution-as-E-textbook-Publisher/Programme/Participating-institutions/

Thursday, January 12, 2017

API IMPORT in Zenodo, Zenodo Github. Research data repository and open access archives. ORCID and DataCite Metadata


Zenodo is a research data repository. It was created by OpenAIRE and CERN to provide a place for researchers to deposit datasets.
https://home.cern/about/updates/2013/05/cern-and-openaireplus-launch-european-research-repository

some examples

an example of a .zip with many pdf

https://zenodo.org/record/168580#.WIeylGrNzdQ

7 blocks (see green arrows)

  1. Title
  2. author
  3. abstract
  4. acknowledgments
  5. frame with pdf or zip...
  6. Files
  7. References




DOI





many export solutions

  1. BibTeX Export
  2. Citation Style Language JSON Export
  3. DataCite XML Export
  4. Dublin Core Export
  5. JSON Export
  6. MARC21 XML Export
  7. a link to Mendeley:
    https://www.mendeley.com/sign/in/?acw=&utt=


If you select JSON for example, you will get directly in the window:


another example, communities COAR

Publications and outputs from or related to the Confederation of Open Access Repositories (COAR). Topics on open access repositories, interoperability, usage data, vocabularies, training, licenses and more.
https://zenodo.org/communities/coar

another example, an article

https://zenodo.org/communities/2249-0205/?page=1&size=20
And
google search
gives this 2nd position:

a web service

Zenodo, a CERN service, is an open dependable home for the long-tail of science, enabling researchers to share and preserve any research outputs in any size, any format and from any science.

DOI

Zenodo assigns all publicly available uploads a Digital Object Identifier (DOI) to make the upload easily and uniquely citeable. Zenodo further supports harvesting of all content via the OAI-PMH protocol.
Withdrawal of data and revocation of DOIs:
Content not considered to fall under the scope of the repository will be removed and associated DOIs issued by Zenodo revoked. Please signal promptly, ideally no later than 24 hours from upload, any suspected policy violation. Alternatively, content found to already have an external DOI will have the Zenodo DOI invalidated and the record updated to indicate the original external DOI. User access may be revoked on violation of Terms of Use.

 DOI from DataCite not CrossRef then you cannot use the crossRef's services.
http://stephane-mottin.blogspot.fr/2017/02/tous-les-doi-noffrent-pas-des-services.html

log

You can log by
  • ORCID Id/passORCID
  • GitHub username/pass
  • email/pass

Upload

What can I upload?

All research outputs from all fields of science are welcome. In the upload form you can choose between types of files: publications (book, book section, conference paper, journal article, patent, preprint, report, thesis, technical note, working paper, etc.), posters, presentations, datasets, images (figures, plots, drawings, diagrams, photos), software, videos/audio and interactive materials such as lessons. We do check every piece of content being uploaded to ensure it is research related.

Dans le champ "description" qui a un  Rich text editor, on ne peut même pas copier/coller du HTML par exemple d'un article PLOS. On ne peut même pas mettre un lien.
On peut saisir une équation en TeX sous la forme par exemple (entre {}):
x = {-b \pm \sqrt{b^2-4ac} \over 2a}

community

Zenodo allows you to create your own collection and accept or reject uploads submitted to it. Creating a space for your next workshop or project has never been easier. Plus, everything is citeable and discoverable!

Want your own community?
It's easy. Just click the button to get started.
  • Curate — accept/reject what goes in your community collection.
  • Export — your community collection is automatically exported via OAI-PMH
  • Upload — get custom upload link to send to people
We currently accept up to 50GB per dataset (you can have multiple datasets); there is no size limit on communities.

Metadata types and sources

All metadata is stored internally in MARC according to the schema defined in http://inveniosoftware.org/wiki/Project/OpenAIREplus/DevelopmentRecordMarkup.
Metadata is exported in several standard formats such as MARCXML, Dublin Core, and DataCite Metadata Schema according to OpenAIRE Guidelines.


Open source

Powered by Invenio
Zenodo is a small layer on top of Invenio http://github.com/inveniosoftware/invenio, a ​free software suite enabling you to run your own ​digital library or document repository on the web.

code:
https://github.com/zenodo/zenodo


GitHub

Zenodo has integration with GitHub to make code hosted in GitHub citable.
  • Select the repository you want to preserve, and toggle the switch below to turn on automatic preservation of your software.
  • Go to GitHub and create a release. Zenodo will automatically download a .zip-ball of each new release and register a DOI.
  • After your first release, a DOI badge that you can include in GitHub README will appear next to your repository below.

https://zenodo.org/account/settings/github/

---

Ref.

https://en.wikipedia.org/wiki/Zenodo
https://en.wikipedia.org/wiki/Category:Open-access_archives

IMPORT in zenodo

resources

Invenio

Zenodo is a small layer on top of Invenio <http://github.com/inveniosoftware/invenio>, a ​free software suite enabling you to run your own ​digital library or document repository on the web.

Invenio is a free software suite enabling you to run your own digital library or document repository on the web. The technology offered by the software covers all aspects of digital library management, from document ingestion through classification, indexing, and curation up to document dissemination. Invenio complies with standards such as the Open Archives Initiative and uses MARC 21 as its underlying bibliographic format. The flexibility and performance of Invenio make it a comprehensive solution for management of document repositories of moderate to large sizes.

Invenio has been originally developed at CERN to run the CERN document server, managing over 1,000,000 bibliographic records in high-energy physics since 2002, covering articles, books, journals, photos, videos, and more. Invenio is nowadays co-developed by an international collaboration comprising institutes such as CERN, DESY, EPFL, FNAL, SLAC and is being used by many more scientific institutions worldwide.

zenodo interface

pour un upload à la main, il y a 11 catégories de champs

  1. Upload type 
    1. Book section 
    2. ... Journal article, etc
  2. Basic Info
    1. date
    2. Title
    3. Authors (one by one)!!!
    4. Description (only text (and math formula) without link!!!)
    5. Keyword
    6. Additional notes, for example sommaire
  3. License
    1. Open
    2. CC 4.0; you must add its category
  4. Communities
    1. integrations (for example)
  5. Funding
    1. CNRS (for exemple)
  6. related/alt identif
    1. ISSN, ISBN, URL
  7. Contributors for example the dir of collection
  8. reference
  9. journal
  10. c
  11. Book
    1. Publisher
    2. Place
    3. ISBN
    4. Book Title
    5. Page (of this book)

zenodo API

The process

an example:
Similar to figshare, Zenodo can store your data and give you a DOI to make it citable.
We have started to deposit all Brain Catalogue’s data at Zenodo, and soon you should be able to cite your favourite brains in your works.
Initially, we uploaded the data manually, but that became tedious very soon. Luckily, Zenodo has a very simple to use and well documented API. In just 3 lines of code using curl you can easily deposit a data file and make it citable (Full information is available at https://zenodo.org/dev).

Before starting anything you need to obtain a token, which is a random alphanumeric string that identifies your queries. You only need to do this once. With your token safely stored (I keep it in the $token variable), data uploading takes just 3 steps:

1. Create a new deposit and obtain a deposit ID:

curl -i -H "Content-Type: application/json" -X POST --data '{"metadata":{"access_right": "open","creators": [{"affiliation": "Brain Catalogue", "name": "Toro, Roberto"}],"description": "Brain MRI","keywords": ["MRI", "Brain"],"license": "cc-by-nc-4.0", "title": "Brain MRI", "upload_type": "dataset"}}' https://zenodo.org/api/deposit/depositions/?access_token=$token |tee zenodo.json

Zenodo responds with a json file, which here I’m saving to zenodo.json. Now you can use awk to parse that file and recover the deposit id. I do that like this:
zid=$(cat zenodo.json|tr , '\n'|awk '/"id"/{printf"%i",$2}')

With your deposit ID in hand, you are ready to upload your data file

2. Upload data file:

curl -i -F name=MRI.nii.gz -F file=@/path/to/the/data/file/MRI.nii.gz https://zenodo.org/api/deposit/depositions/$zid/files?access_token=$token

The server will respond with a HTTP 100 ‘Continue’ message, and depending on the size of your file you’ll have to wait some time. Once the upload is finished you are ready to

3. Publish your dataset:

curl -i -X POST https://zenodo.org/api/deposit/depositions/$zid/actions/publish?access_token=$token

And that’s it. You can now go to Zenodo and view the web page for your data


Ref.
http://siphonophore.org/blog/2016/01/16/at-brain-catalogue-we-love-zenodo/

---
A bug in JSON object
https://github.com/zenodo/zenodo/issues/865
on the web documentation API Documentation for developers ( https://zenodo.org/dev)
Resources > Representations > Deposition metadata > subjects

the example of json object for subject is :
[{"term": "Astronomy",
"id": "http://id.loc.gov/authorities/subjects/sh85009003",
"scheme": "url"}]
but id is not supported and the json is rejected
the field must named 'identifier'

resources

http://developers.zenodo.org/ 
(Zenodo REST API documentation uses Slate. )

bof: https://zenodo.readthedocs.io/



Ref. https://indico.cern.ch/event/533421/contributions/2330179/attachments/1378438/2094268/kumasi2016-practical-exercises-rest-api.pdf

blog zenodo

http://blog.zenodo.org/
Zenodo docs have landed!
by  Krzysztof Nowak on January 23, 2017

wiki zenodo

https://github.com/zenodo/zenodo/wiki/What's-new%3F

YAML Github
Zenodio is a Python package we’re building to interact with Zenodo. For our various doc/technote/publishing projects we want to use YAML files (embedded in a Git repository, for example) to maintain deposition metadata so that the upload process itself can be automated.
The zenodio.metadata sub package provides a Python representation of Zenodo metadata (but not File or Zenodo deposition metadata).
Zenodio is a simple Python interface for getting data into and out of Zenodo, the digital archive developed by CERN. Zenodo is an awesome tool for scientists to archive the products of research, including datasets, codes, and documents. Zenodio adds a layer of mechanization to Zenodo, allowing you to grab metadata about records in a Zenodo collection, or upload new artifacts to Zenodo with a smart Python API.
We’re still designing the upload API, but metadata harvesting is ready to go.
Zenodio is built by SQuaRE for the Large Synoptic Survey Telescope.
https://github.com/lsst-sqre/zenodio/tree/metadata_api
http://zenodio.lsst.io/en/latest/
https://jira.lsstcorp.org/browse/DM-4852

Differences between ORCID and DataCite (DOI) Metadata

THOR is a 30 month project funded by the European Commission under the Horizon 2020 programme. It will establish seamless integration between articles, data, and researchers across the research lifecycle. This will create a wealth of open resources and foster a sustainable international e-infrastructure.

Differences between ORCID and DataCite Metadata
One of the first tasks for DataCite in the European Commission-funded THOR project, which started in June 2015, was to contribute to a comparison of the ORCID and DataCite metadata standards. Together with ORCID, CERN, the British Library and Dryad we looked at how contributors, organizations and artefacts - and the relations between them - are described in the respective metadata schemata, and how they are implemented in two example data repositories, Archaeology Data Service and Dryad Digital Repository. The focus of our work was on identifying major gaps. Our report was finished and made publicly available in September 2015. The key findings are on these topics:
  • Common Approach to Personal Names
  • Standardized Contributor Roles
  • Standardized Relation Types
  • Metadata for Organisations
  • Persistent Identifiers for Projects
  • Harmonization of ORCID and DataCite Metadata

https://project-thor.readme.io/docs/differences-between-orcid-and-datacite-metadata

This document identifies gaps in existing PID infrastructures, with a focus on ORCID and DataCite Metadata and links between contributors, organizations and artefacts. What prevents us from establishing interoperability and overcoming barriers between PID platforms for contributors, artefacts and organisations, and research solutions for federated attribution, claiming, publishing and direct data access? It goes on to propose strategies to overcome these gaps.:
https://zenodo.org/record/30799#.WIi5DmrNzdQ